Basic functinality to train a single regression tree is

implemented.

.gitignore

@@ -2,3 +2,5 @@
 .settings
 .project
 target/
+*.iml
+.idea

pom.xml

@@ -0,0 +1,31 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project xmlns="http://maven.apache.org/POM/4.0.0"
+         xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+    <modelVersion>4.0.0</modelVersion>
+
+    <groupId>ca.joeltherrien</groupId>
+    <artifactId>RandomSurvivalForests</artifactId>
+    <version>1.0-SNAPSHOT</version>
+
+    <properties>
+        <java.version>1.10</java.version>
+        <maven.compiler.target>1.10</maven.compiler.target>
+        <maven.compiler.source>1.10</maven.compiler.source>
+    </properties>
+
+
+    <dependencies>
+        <dependency>
+            <groupId>org.projectlombok</groupId>
+            <artifactId>lombok</artifactId>
+            <version>1.18.0</version>
+            <scope>provided</scope>
+        </dependency>
+
+
+
+    </dependencies>
+
+
+</project>

src/ca/joeltherrien/randomforest/Main.java

@@ -1,10 +0,0 @@
-package ca.joeltherrien.randomforest;
-
-public class Main {
-
-	public static void main(String[] args) {
-		System.out.println("Hello world!");
-
-	}
-
-}

src/ca/joeltherrien/randomforest/Node.java

@@ -1,5 +0,0 @@
-package ca.joeltherrien.randomforest;
-
-public class Node {
-
-}

src/ca/joeltherrien/randomforest/NumericSplitRule.java

@@ -1,44 +0,0 @@
-package ca.joeltherrien.randomforest;
-
-import java.util.LinkedList;
-import java.util.List;
-
-import ca.joeltherrien.randomforest.exceptions.MissingValueException;
-
-public class NumericSplitRule implements SplitRule{
-
-	public final String covariateName;	
-	public final double threshold;
-	
-	public NumericSplitRule(String covariateName, double threshold) {
-		super();
-		this.covariateName = covariateName;
-		this.threshold = threshold;
-	}
-	
-	@Override
-	public final String toString() {
-		return "NumericSplitRule on " + covariateName + " at " + threshold;
-	}
-
-	@Override
-	public <Y> Split<Y> applyRule(List<Row<Y>> rows) {
-		final List<Row<Y>> leftHand = new LinkedList<>();
-		final List<Row<Y>> rightHand = new LinkedList<>();
-		
-		for(final Row<Y> row : rows) {
-			final Value x = row.getCovariate(covariateName);
-			if(x == null) {
-				throw new MissingValueException(row, this);
-			}
-			
-			final NumericValue xNum = (NumericValue) x;
-			
-		}
-		
-		// TODO Auto-generated method stub
-		return null;
-	}
-	
-	
-}

src/ca/joeltherrien/randomforest/Row.java

@@ -1,33 +0,0 @@
-package ca.joeltherrien.randomforest;
-
-import java.util.Map;
-
-public class Row<Y> {
-	
-	private final Map<String, Value> covariates;
-	private final Y response;
-	private final int id;
-	
-	public Row(Map<String, Value> covariates, Y response, int id) {
-		super();
-		this.covariates = covariates;
-		this.response = response;
-		this.id = id;
-	}
-	
-	public Value getCovariate(String name) {
-		return this.covariates.get(name);
-	}
-	
-	public Y getResponse() {
-		return this.response;
-	}
-	
-	@Override
-	public String toString() {
-		return "Row " + this.id;
-	}
-	
-	
-	
-}

src/ca/joeltherrien/randomforest/SplitRule.java

@@ -1,9 +0,0 @@
-package ca.joeltherrien.randomforest;
-
-import java.util.List;
-
-public interface SplitRule {
-
-	<Y> Split<Y> applyRule(List<Row<Y>> rows);
-	
-}

src/ca/joeltherrien/randomforest/Value.java

@@ -1,7 +0,0 @@
-package ca.joeltherrien.randomforest;
-
-public interface Value {
-
-	// TODO
-	
-}

src/main/java/ca/joeltherrien/randomforest/CovariateRow.java

@@ -0,0 +1,26 @@
+package ca.joeltherrien.randomforest;
+
+import lombok.Getter;
+import lombok.RequiredArgsConstructor;
+
+import java.util.Map;
+
+@RequiredArgsConstructor
+public class CovariateRow {
+
+    private final Map<String, Value> valueMap;
+
+    @Getter
+    private final int id;
+
+    public Value<?> getCovariate(String name){
+        return valueMap.get(name);
+
+    }
+
+    @Override
+    public String toString(){
+        return "CovariateRow " + this.id;
+    }
+
+}

src/main/java/ca/joeltherrien/randomforest/Main.java

@@ -0,0 +1,146 @@
+package ca.joeltherrien.randomforest;
+
+
+import ca.joeltherrien.randomforest.regression.MeanGroupDifferentiator;
+import ca.joeltherrien.randomforest.regression.MeanResponseCombiner;
+import ca.joeltherrien.randomforest.regression.WeightedVarianceGroupDifferentiator;
+import ca.joeltherrien.randomforest.tree.Node;
+import ca.joeltherrien.randomforest.tree.TreeTrainer;
+
+import java.util.*;
+import java.util.stream.Collectors;
+import java.util.stream.DoubleStream;
+
+public class Main {
+
+	public static void main(String[] args) {
+		System.out.println("Hello world!");
+
+        final Random random = new Random(123);
+
+        final int n = 1000;
+        final List<Row<Double>> trainingSet = new ArrayList<>(n);
+
+        final List<Value<Double>> x1List = DoubleStream
+                .generate(() -> random.nextDouble()*10.0)
+                .limit(n)
+                .mapToObj(x1 -> new NumericValue(x1))
+                .collect(Collectors.toList());
+
+        final List<Value<Double>> x2List = DoubleStream
+                .generate(() -> random.nextDouble()*10.0)
+                .limit(n)
+                .mapToObj(x1 -> new NumericValue(x1))
+                .collect(Collectors.toList());
+
+
+
+        for(int i=0; i<n; i++){
+            double x1 = x1List.get(i).getValue();
+            double x2 = x2List.get(i).getValue();
+
+            trainingSet.add(generateRow(x1, x2, i));
+        }
+
+
+        final long startTime = System.currentTimeMillis();
+
+        final TreeTrainer<Double> treeTrainer = TreeTrainer.<Double>builder()
+                .groupDifferentiator(new WeightedVarianceGroupDifferentiator())
+                .responseCombiner(new MeanResponseCombiner())
+                .maxNodeDepth(30)
+                .nodeSize(5)
+                .numberOfSplits(0)
+                .build();
+
+        final long endTime = System.currentTimeMillis();
+
+        System.out.println(((double)(endTime - startTime))/1000.0);
+
+        final List<String> covariateNames = List.of("x1", "x2");
+
+        final Node<Double> baseNode = treeTrainer.growTree(trainingSet, covariateNames);
+
+
+        final List<CovariateRow> testSet = new ArrayList<>();
+        testSet.add(generateCovariateRow(9, 2, 1)); // expect 1
+        testSet.add(generateCovariateRow(5, 2, 5));
+        testSet.add(generateCovariateRow(2, 2, 3));
+        testSet.add(generateCovariateRow(9, 5, 0));
+        testSet.add(generateCovariateRow(6, 5, 8));
+        testSet.add(generateCovariateRow(3, 5, 10));
+        testSet.add(generateCovariateRow(1, 5, 3));
+        testSet.add(generateCovariateRow(7, 9, 2));
+        testSet.add(generateCovariateRow(1, 9, 4));
+
+        for(final CovariateRow testCase : testSet){
+            System.out.println(testCase);
+            System.out.println(baseNode.evaluate(testCase));
+            System.out.println();
+
+
+        }
+
+
+
+
+
+    }
+
+	public static Row<Double> generateRow(double x1, double x2, int id){
+	    double y = generateResponse(x1, x2);
+
+	    final Map<String, Value> map = Map.of("x1", new NumericValue(x1), "x2", new NumericValue(x2));
+
+        return new Row<>(map, id, y);
+
+    }
+
+
+    public static CovariateRow generateCovariateRow(double x1, double x2, int id){
+        final Map<String, Value> map = Map.of("x1", new NumericValue(x1), "x2", new NumericValue(x2));
+
+        return new CovariateRow(map, id);
+
+    }
+
+
+	public static double generateResponse(double x1, double x2){
+	    if(x2 <= 3){
+	        if(x1 <= 3){
+	            return 3;
+            }
+            else if(x1 <= 7){
+	            return 5;
+            }
+            else{
+	            return 1;
+            }
+        }
+        else if(x1 >= 5){
+	        if(x2 > 6){
+	            return 2;
+            }
+            else if(x1 >= 8){
+	            return 0;
+            }
+            else{
+	            return 8;
+            }
+        }
+        else if(x1 <= 2){
+	        if(x2 >= 7){
+	            return 4;
+            }
+            else{
+	            return 3;
+            }
+        }
+        else{
+	        return 10;
+        }
+
+
+    }
+
+}

src/main/java/ca/joeltherrien/randomforest/NumericSplitRule.java

@@ -0,0 +1,33 @@
+package ca.joeltherrien.randomforest;
+
+import java.util.LinkedList;
+import java.util.List;
+
+import ca.joeltherrien.randomforest.exceptions.MissingValueException;
+import lombok.AllArgsConstructor;
+
+@AllArgsConstructor
+public class NumericSplitRule extends SplitRule{
+
+	public final String covariateName;	
+	public final double threshold;
+
+	@Override
+	public final String toString() {
+		return "NumericSplitRule on " + covariateName + " at " + threshold;
+	}
+
+    @Override
+    public boolean isLeftHand(CovariateRow row) {
+        final Value<?> x = row.getCovariate(covariateName);
+        if(x == null) {
+            throw new MissingValueException(row, this);
+        }
+
+        final double xNum = (Double) x.getValue();
+
+        return xNum <= threshold;
+    }
+
+
+}

src/main/java/ca/joeltherrien/randomforest/NumericValue.java

@@ -0,0 +1,19 @@
+package ca.joeltherrien.randomforest;
+
+import lombok.RequiredArgsConstructor;
+
+@RequiredArgsConstructor
+public class NumericValue implements Value<Double> {
+
+    private final double value;
+
+    @Override
+    public Double getValue() {
+        return value;
+    }
+
+    @Override
+    public SplitRule generateSplitRule(final String covariateName) {
+        return new NumericSplitRule(covariateName, value);
+    }
+}

src/main/java/ca/joeltherrien/randomforest/ResponseCombiner.java

@@ -0,0 +1,9 @@
+package ca.joeltherrien.randomforest;
+
+import java.util.List;
+
+public interface ResponseCombiner<Y> {
+
+    Y combine(List<Y> responses);
+
+}

src/main/java/ca/joeltherrien/randomforest/Row.java

@@ -0,0 +1,27 @@
+package ca.joeltherrien.randomforest;
+
+
+import java.util.Map;
+
+public class Row<Y> extends CovariateRow {
+
+	private final Y response;
+
+	public Row(Map<String, Value> valueMap, int id, Y response){
+	    super(valueMap, id);
+	    this.response = response;
+    }
+
+
+	public Y getResponse() {
+		return this.response;
+	}
+	
+	@Override
+	public String toString() {
+		return "Row " + this.getId();
+	}
+	
+	
+	
+}

src/main/java/ca/joeltherrien/randomforest/Split.java

@@ -1,5 +1,7 @@
 package ca.joeltherrien.randomforest;
 
+import lombok.Data;
+
 import java.util.List;
 
 /**
@@ -8,13 +10,10 @@ import java.util.List;
  * @author joel
  *
  */
+@Data
 public class Split<Y> {
 
 	public final List<Row<Y>> leftHand;
 	public final List<Row<Y>> rightHand;
 
-	public Split(List<Row<Y>> leftHand, List<Row<Y>> rightHand){
-		this.leftHand = leftHand;
-		this.rightHand = rightHand;
-	}
 }

src/main/java/ca/joeltherrien/randomforest/SplitRule.java

@@ -0,0 +1,36 @@
+package ca.joeltherrien.randomforest;
+
+import java.util.LinkedList;
+import java.util.List;
+
+public abstract class SplitRule {
+
+    /**
+     * Applies the SplitRule to a list of rows and returns a Split object, which contains two lists for both sides.
+     * This method is primarily used during the training of a tree when splits are being tested.
+     *
+     * @param rows
+     * @param <Y>
+     * @return
+     */
+    public <Y> Split<Y> applyRule(List<Row<Y>> rows) {
+        final List<Row<Y>> leftHand = new LinkedList<>();
+        final List<Row<Y>> rightHand = new LinkedList<>();
+
+        for(final Row<Y> row : rows) {
+
+            if(isLeftHand(row)){
+                leftHand.add(row);
+            }
+            else{
+                rightHand.add(row);
+            }
+
+        }
+
+        return new Split<>(leftHand, rightHand);
+    }
+
+    public abstract boolean isLeftHand(CovariateRow row);
+	
+}

src/main/java/ca/joeltherrien/randomforest/Value.java

@@ -0,0 +1,11 @@
+package ca.joeltherrien.randomforest;
+
+
+public interface Value<V> {
+
+    V getValue();
+
+    SplitRule generateSplitRule(String covariateName);
+
+
+}

src/main/java/ca/joeltherrien/randomforest/exceptions/MissingValueException.java

@@ -1,5 +1,6 @@
 package ca.joeltherrien.randomforest.exceptions;
 
+import ca.joeltherrien.randomforest.CovariateRow;
 import ca.joeltherrien.randomforest.Row;
 import ca.joeltherrien.randomforest.SplitRule;
 
@@ -10,8 +11,8 @@ public class MissingValueException extends RuntimeException{
 	 */
 	private static final long serialVersionUID = 6808060079431207726L;
 	
-	public MissingValueException(Row<?> row, SplitRule rule) {
-		super("Missing value at row " + row + rule);
+	public MissingValueException(CovariateRow row, SplitRule rule) {
+		super("Missing value at CovariateRow " + row + rule);
 	}
 
 }

src/main/java/ca/joeltherrien/randomforest/regression/MeanGroupDifferentiator.java

@@ -0,0 +1,26 @@
+package ca.joeltherrien.randomforest.regression;
+
+import ca.joeltherrien.randomforest.tree.GroupDifferentiator;
+
+import java.util.List;
+
+public class MeanGroupDifferentiator implements GroupDifferentiator<Double> {
+
+    @Override
+    public Double differentiate(List<Double> leftHand, List<Double> rightHand) {
+
+        double leftHandSize = leftHand.size();
+        double rightHandSize = rightHand.size();
+
+        if(leftHandSize == 0 || rightHandSize == 0){
+            return null;
+        }
+
+        double leftHandMean = leftHand.stream().mapToDouble(db -> db/leftHandSize).sum();
+        double rightHandMean = rightHand.stream().mapToDouble(db -> db/rightHandSize).sum();
+
+        return Math.abs(leftHandMean - rightHandMean);
+
+    }
+
+}

src/main/java/ca/joeltherrien/randomforest/regression/MeanResponseCombiner.java

@@ -0,0 +1,16 @@
+package ca.joeltherrien.randomforest.regression;
+
+import ca.joeltherrien.randomforest.ResponseCombiner;
+
+import java.util.List;
+
+public class MeanResponseCombiner implements ResponseCombiner<Double> {
+
+    @Override
+    public Double combine(List<Double> responses) {
+        double size = responses.size();
+
+        return responses.stream().mapToDouble(db -> db/size).sum();
+
+    }
+}

src/main/java/ca/joeltherrien/randomforest/regression/WeightedVarianceGroupDifferentiator.java

@@ -0,0 +1,30 @@
+package ca.joeltherrien.randomforest.regression;
+
+import ca.joeltherrien.randomforest.tree.GroupDifferentiator;
+
+import java.util.List;
+
+public class WeightedVarianceGroupDifferentiator implements GroupDifferentiator<Double> {
+
+    @Override
+    public Double differentiate(List<Double> leftHand, List<Double> rightHand) {
+
+        final double leftHandSize = leftHand.size();
+        final double rightHandSize = rightHand.size();
+        final double n = leftHandSize + rightHandSize;
+
+        if(leftHandSize == 0 || rightHandSize == 0){
+            return null;
+        }
+
+        final double leftHandMean = leftHand.stream().mapToDouble(db -> db/leftHandSize).sum();
+        final double rightHandMean = rightHand.stream().mapToDouble(db -> db/rightHandSize).sum();
+
+        final double leftVariance = leftHand.stream().mapToDouble(db -> (db - leftHandMean)*(db - leftHandMean)).sum();
+        final double rightVariance = rightHand.stream().mapToDouble(db -> (db - rightHandMean)*(db - rightHandMean)).sum();
+
+        return -(leftVariance + rightVariance) / n;
+
+    }
+
+}

src/main/java/ca/joeltherrien/randomforest/tree/GroupDifferentiator.java

@@ -0,0 +1,15 @@
+package ca.joeltherrien.randomforest.tree;
+
+import java.util.List;
+
+/**
+ * When choosing an optimal node to split on, we choose the split that maximizes the difference between the two groups.
+ * The GroupDifferentiator has one method that outputs a score to show how different groups are. The larger the score,
+ * the greater the difference.
+ *
+ */
+public interface GroupDifferentiator<Y> {
+
+    Double differentiate(List<Y> leftHand, List<Y> rightHand);
+
+}

src/main/java/ca/joeltherrien/randomforest/tree/Node.java

@@ -0,0 +1,9 @@
+package ca.joeltherrien.randomforest.tree;
+
+import ca.joeltherrien.randomforest.CovariateRow;
+
+public interface Node<Y> {
+
+    Y evaluate(CovariateRow row);
+
+}

src/main/java/ca/joeltherrien/randomforest/tree/SplitNode.java

@@ -0,0 +1,26 @@
+package ca.joeltherrien.randomforest.tree;
+
+import ca.joeltherrien.randomforest.CovariateRow;
+import ca.joeltherrien.randomforest.Row;
+import ca.joeltherrien.randomforest.SplitRule;
+import lombok.Builder;
+
+@Builder
+public class SplitNode<Y> implements Node<Y> {
+
+    private final Node<Y> leftHand;
+    private final Node<Y> rightHand;
+    private final SplitRule splitRule;
+
+    @Override
+    public Y evaluate(CovariateRow row) {
+
+        if(splitRule.isLeftHand(row)){
+            return leftHand.evaluate(row);
+        }
+        else{
+            return rightHand.evaluate(row);
+        }
+
+    }
+}

src/main/java/ca/joeltherrien/randomforest/tree/TerminalNode.java

@@ -0,0 +1,20 @@
+package ca.joeltherrien.randomforest.tree;
+
+import ca.joeltherrien.randomforest.CovariateRow;
+
+import lombok.RequiredArgsConstructor;
+
+@RequiredArgsConstructor
+public class TerminalNode<Y> implements Node<Y> {
+
+    private final Y responseValue;
+
+    @Override
+    public Y evaluate(CovariateRow row){
+        return responseValue;
+    }
+
+
+
+
+}

src/main/java/ca/joeltherrien/randomforest/tree/TreeTrainer.java

@@ -0,0 +1,105 @@
+package ca.joeltherrien.randomforest.tree;
+
+import ca.joeltherrien.randomforest.ResponseCombiner;
+import ca.joeltherrien.randomforest.Row;
+import ca.joeltherrien.randomforest.Split;
+import ca.joeltherrien.randomforest.SplitRule;
+import lombok.Builder;
+
+import java.util.Collections;
+import java.util.List;
+import java.util.stream.Collectors;
+
+@Builder
+public class TreeTrainer<Y> {
+
+    private final ResponseCombiner<Y> responseCombiner;
+    private final GroupDifferentiator<Y> groupDifferentiator;
+
+    /**
+     * The number of splits to perform on each covariate. A value of 0 means all possible splits are tried.
+     *
+     */
+    private final int numberOfSplits;
+    private final int nodeSize;
+    private final int maxNodeDepth;
+
+
+    public Node<Y> growTree(List<Row<Y>> data, List<String> covariatesToTry){
+        return growNode(data, covariatesToTry, 0);
+    }
+
+    private Node<Y> growNode(List<Row<Y>> data, List<String> covariatesToTry, int depth){
+        // TODO; what is minimum per tree?
+        if(data.size() >= 2*nodeSize && depth < maxNodeDepth && !nodeIsPure(data, covariatesToTry)){
+            final SplitRule bestSplitRule = findBestSplitRule(data, covariatesToTry);
+
+            final Split<Y> split = bestSplitRule.applyRule(data); // TODO optimize this as we're duplicating work done in findBestSplitRule
+
+            final Node<Y> leftNode = growNode(split.leftHand, covariatesToTry, depth+1);
+            final Node<Y> rightNode = growNode(split.rightHand, covariatesToTry, depth+1);
+
+            return new SplitNode<>(leftNode, rightNode, bestSplitRule);
+
+        }
+        else{
+            return new TerminalNode<>(responseCombiner.combine(
+                    data.stream()
+                            .map(row -> row.getResponse())
+                            .collect(Collectors.toList()))
+
+            );
+        }
+
+
+    }
+
+    private SplitRule findBestSplitRule(List<Row<Y>> data, List<String> covariatesToTry){
+        SplitRule bestSplitRule = null;
+        double bestSplitScore = 0;
+        boolean first = true;
+
+        for(final String covariate : covariatesToTry){
+            Collections.shuffle(data);
+
+            int tries = 0;
+            while(tries <= numberOfSplits || (numberOfSplits == 0 && tries < data.size())){
+                final SplitRule possibleRule = data.get(tries).getCovariate(covariate).generateSplitRule(covariate);
+                final Split<Y> possibleSplit = possibleRule.applyRule(data);
+
+                final Double score = groupDifferentiator.differentiate(
+                        possibleSplit.leftHand.stream().map(row -> row.getResponse()).collect(Collectors.toList()),
+                        possibleSplit.rightHand.stream().map(row -> row.getResponse()).collect(Collectors.toList())
+                );
+
+                /*
+                if( (groupDifferentiator.shouldMaximize() && score > bestSplitScore) || (!groupDifferentiator.shouldMaximize() && score < bestSplitScore) || first){
+                    bestSplitRule = possibleRule;
+                    bestSplitScore = score;
+                    first = false;
+                }
+                */
+
+                if( score != null && (score > bestSplitScore || first)){
+                    bestSplitRule = possibleRule;
+                    bestSplitScore = score;
+                    first = false;
+                }
+
+                tries++;
+            }
+
+        }
+
+        return bestSplitRule;
+
+    }
+
+    private boolean nodeIsPure(List<Row<Y>> data, List<String> covariatesToTry){
+        // TODO how is this done?
+
+        final Y first = data.get(0).getResponse();
+        return data.stream().allMatch(row -> row.getResponse().equals(first));
+    }
+
+}