Add binary and unary operations to RightContinuousStepFunctions
This commit is contained in:
Joel Therrien
parent
d7cdc9f6e7
commit
ae9a6b9a3f
5 changed files with 260 additions and 268 deletions
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@ -1,113 +0,0 @@
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/*
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* Copyright (c) 2019 Joel Therrien.
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* This program is free software: you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation, either version 3 of the License, or
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* (at your option) any later version.
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*
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* This program is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License
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* along with this program. If not, see <https://www.gnu.org/licenses/>.
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*/
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package ca.joeltherrien.randomforest.utils;
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/**
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* Represents a function represented by discrete points. However, the function may be right-continuous or left-continuous
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* at a given point, with no consistency. This function tracks that.
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*/
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public final class DiscontinuousStepFunction extends StepFunction {
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private final double[] y;
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private final boolean[] isLeftContinuous;
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/**
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* Represents the value that should be returned by evaluate if there are points prior to the time the function is being evaluated at.
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*
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* Map be null.
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*/
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private final double defaultY;
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public DiscontinuousStepFunction(double[] x, double[] y, boolean[] isLeftContinuous, double defaultY) {
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super(x);
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this.y = y;
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this.isLeftContinuous = isLeftContinuous;
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this.defaultY = defaultY;
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}
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@Override
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public double evaluate(double time){
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int index = Utils.binarySearchLessThan(0, x.length, x, time);
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if(index < 0){
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return defaultY;
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}
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else{
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if(x[index] == time){
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return evaluateByIndex(index);
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}
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else{
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return y[index];
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}
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}
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}
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@Override
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public double evaluatePrevious(double time){
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int index = Utils.binarySearchLessThan(0, x.length, x, time) - 1;
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if(index < 0){
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return defaultY;
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}
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else{
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if(x[index] == time){
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return evaluateByIndex(index);
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}
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else{
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return y[index];
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}
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}
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}
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@Override
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public double evaluateByIndex(int i) {
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if(isLeftContinuous[i]){
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i -= 1;
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}
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if(i < 0){
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return defaultY;
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}
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return y[i];
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}
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@Override
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public String toString(){
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final StringBuilder builder = new StringBuilder();
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builder.append("Default point: ");
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builder.append(defaultY);
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builder.append("\n");
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for(int i=0; i<x.length; i++){
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builder.append("x:");
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builder.append(x[i]);
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builder.append('\t');
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if(isLeftContinuous[i]){
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builder.append("*y:");
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}
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else{
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builder.append("y*:");
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}
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builder.append(y[i]);
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builder.append("\n");
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}
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return builder.toString();
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}
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}
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@ -1,129 +0,0 @@
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/*
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* Copyright (c) 2019 Joel Therrien.
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* This program is free software: you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation, either version 3 of the License, or
|
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* (at your option) any later version.
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*
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* This program is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License
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* along with this program. If not, see <https://www.gnu.org/licenses/>.
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*/
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package ca.joeltherrien.randomforest.utils;
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import java.util.List;
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import java.util.ListIterator;
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/**
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* Represents a function represented by discrete points. We assume that the function is a stepwise left-continuous
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* function, constant at the value of the previous encountered point.
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*
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*/
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public final class LeftContinuousStepFunction extends StepFunction {
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private final double[] y;
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/**
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* Represents the value that should be returned by evaluate if there are points prior to the time the function is being evaluated at.
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*
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* Map be null.
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*/
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private final double defaultY;
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public LeftContinuousStepFunction(double[] x, double[] y, double defaultY) {
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super(x);
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this.y = y;
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this.defaultY = defaultY;
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}
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/**
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* This isn't a formal constructor because of limitations with abstract classes.
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*
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* @param pointList
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* @param defaultY
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* @return
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*/
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public static LeftContinuousStepFunction constructFromPoints(final List<Point> pointList, final double defaultY){
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final double[] x = new double[pointList.size()];
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final double[] y = new double[pointList.size()];
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final ListIterator<Point> pointIterator = pointList.listIterator();
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while(pointIterator.hasNext()){
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final int index = pointIterator.nextIndex();
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final Point currentPoint = pointIterator.next();
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x[index] = currentPoint.getTime();
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y[index] = currentPoint.getY();
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}
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return new LeftContinuousStepFunction(x, y, defaultY);
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}
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@Override
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public double evaluate(double time){
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int index = Utils.binarySearchLessThan(0, x.length, x, time);
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if(index < 0){
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return defaultY;
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}
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else{
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if(x[index] == time){
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return evaluateByIndex(index-1);
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}
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else{
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return y[index];
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}
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}
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}
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@Override
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public double evaluatePrevious(double time){
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int index = Utils.binarySearchLessThan(0, x.length, x, time) - 1;
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if(index < 0){
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return defaultY;
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}
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else{
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if(x[index] == time){
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return evaluateByIndex(index-1);
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}
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else{
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return y[index];
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}
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}
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}
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@Override
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public double evaluateByIndex(int i) {
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if(i < 0){
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return defaultY;
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}
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return y[i];
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}
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@Override
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public String toString(){
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final StringBuilder builder = new StringBuilder();
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builder.append("Default point: ");
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builder.append(defaultY);
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builder.append("\n");
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for(int i=0; i<x.length; i++){
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builder.append("x:");
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builder.append(x[i]);
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builder.append("\ty:");
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builder.append(y[i]);
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builder.append("\n");
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}
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return builder.toString();
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}
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}
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@ -16,8 +16,15 @@
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package ca.joeltherrien.randomforest.utils;
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package ca.joeltherrien.randomforest.utils;
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import java.util.ArrayList;
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import java.util.Arrays;
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import java.util.List;
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import java.util.List;
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import java.util.ListIterator;
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import java.util.ListIterator;
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import java.util.function.DoubleBinaryOperator;
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import java.util.function.DoubleUnaryOperator;
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import java.util.function.ToDoubleBiFunction;
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import java.util.stream.DoubleStream;
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import java.util.stream.Stream;
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/**
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/**
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* Represents a function represented by discrete points. We assume that the function is a stepwise right-continuous
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* Represents a function represented by discrete points. We assume that the function is a stepwise right-continuous
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@ -29,9 +36,9 @@ public final class RightContinuousStepFunction extends StepFunction {
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private final double[] y;
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private final double[] y;
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/**
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/**
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* Represents the value that should be returned by evaluate if there are points prior to the time the function is being evaluated at.
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* Represents the value that should be returned by evaluate if there are no points prior to the time the function is being evaluated at.
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*
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*
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* Map be null.
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* May not be null.
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*/
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*/
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private final double defaultY;
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private final double defaultY;
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@ -186,5 +193,76 @@ public final class RightContinuousStepFunction extends StepFunction {
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}
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}
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public RightContinuousStepFunction unaryOperation(DoubleUnaryOperator operator){
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final double newDefaultY = operator.applyAsDouble(this.defaultY);
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final double[] newY = Arrays.stream(this.getY()).map(operator).toArray();
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return new RightContinuousStepFunction(this.getX(), newY, newDefaultY);
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}
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public static RightContinuousStepFunction biOperation(RightContinuousStepFunction funLeft,
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RightContinuousStepFunction funRight,
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DoubleBinaryOperator operator){
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final double newDefaultY = operator.applyAsDouble(funLeft.defaultY, funRight.defaultY);
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final double[] leftX = funLeft.x;
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final double[] rightX = funRight.x;
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final List<Point> combinedPoints = new ArrayList<>(leftX.length + rightX.length);
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// These indexes represent the times that have *already* been processed.
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// They start at -1 because we already processed the defaultY values.
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int indexLeft = -1;
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int indexRight = -1;
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// This while-loop will keep going until one of the functions reaches the ends of its points
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while(indexLeft < leftX.length-1 && indexRight < rightX.length-1){
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final double time;
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if(leftX[indexLeft+1] < rightX[indexRight+1]){
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indexLeft += 1;
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time = leftX[indexLeft];
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combinedPoints.add(new Point(time, operator.applyAsDouble(funLeft.evaluateByIndex(indexLeft), funRight.evaluateByIndex(indexRight))));
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}
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else if(leftX[indexLeft+1] > rightX[indexRight+1]){
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indexRight += 1;
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time = rightX[indexRight];
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combinedPoints.add(new Point(time, operator.applyAsDouble(funLeft.evaluateByIndex(indexLeft), funRight.evaluateByIndex(indexRight))));
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}
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else{ // equal times
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indexLeft += 1;
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indexRight += 1;
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time = leftX[indexLeft];
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combinedPoints.add(new Point(time, operator.applyAsDouble(funLeft.evaluateByIndex(indexLeft), funRight.evaluateByIndex(indexRight))));
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}
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}
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// At this point, at least one of function left or function right has reached the end of its points
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// This while-loop occurring implies that functionRight can not move forward anymore
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while(indexLeft < leftX.length-1){
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indexLeft += 1;
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final double time = leftX[indexLeft];
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combinedPoints.add(new Point(time, operator.applyAsDouble(funLeft.evaluateByIndex(indexLeft), funRight.evaluateByIndex(indexRight))));
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}
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// This while-loop occurring implies that functionLeft can not move forward anymore
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while(indexRight < rightX.length-1){
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indexRight += 1;
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final double time = rightX[indexRight];
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combinedPoints.add(new Point(time, operator.applyAsDouble(funLeft.evaluateByIndex(indexLeft), funRight.evaluateByIndex(indexRight))));
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}
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return RightContinuousStepFunction.constructFromPoints(combinedPoints, newDefaultY);
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}
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}
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}
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package ca.joeltherrien.randomforest.competingrisk;
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package ca.joeltherrien.randomforest.competingrisk;
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import ca.joeltherrien.randomforest.utils.LeftContinuousStepFunction;
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import ca.joeltherrien.randomforest.utils.RightContinuousStepFunction;
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import ca.joeltherrien.randomforest.utils.RightContinuousStepFunction;
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import org.junit.jupiter.api.Test;
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import org.junit.jupiter.api.Test;
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@ -31,13 +30,6 @@ public class TestMathFunctions {
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return new RightContinuousStepFunction(time, y, 0.1);
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return new RightContinuousStepFunction(time, y, 0.1);
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}
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}
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private LeftContinuousStepFunction generateLeftContinuousStepFunction(){
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final double[] time = new double[]{1.0, 2.0, 3.0};
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final double[] y = new double[]{-1.0, 1.0, 0.5};
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return new LeftContinuousStepFunction(time, y, 0.1);
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}
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@Test
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@Test
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public void testRightContinuousStepFunction(){
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public void testRightContinuousStepFunction(){
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final RightContinuousStepFunction function = generateRightContinuousStepFunction();
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final RightContinuousStepFunction function = generateRightContinuousStepFunction();
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@ -56,21 +48,5 @@ public class TestMathFunctions {
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}
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}
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@Test
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public void testLeftContinuousStepFunction(){
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final LeftContinuousStepFunction function = generateLeftContinuousStepFunction();
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assertEquals(0.1, function.evaluate(0.5));
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assertEquals(0.1, function.evaluate(1.0));
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assertEquals(-1.0, function.evaluate(2.0));
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assertEquals(1.0, function.evaluate(3.0));
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assertEquals(0.1, function.evaluate(0.6));
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assertEquals(-1.0, function.evaluate(1.1));
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assertEquals(1.0, function.evaluate(2.1));
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assertEquals(0.5, function.evaluate(3.1));
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}
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}
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}
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@ -0,0 +1,180 @@
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package ca.joeltherrien.randomforest.utils;
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import org.junit.jupiter.api.Test;
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import java.util.function.DoubleBinaryOperator;
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import java.util.function.DoubleUnaryOperator;
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import static org.junit.jupiter.api.Assertions.assertEquals;
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public class RightContinuousStepFunctionOperatorTests {
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|
// Idea - small and middle slightly overlap; middle and large slightly overlap.
|
||||||
|
// small and large never overlap (i.e. small's x values always occur before large's)
|
||||||
|
private final RightContinuousStepFunction smallNumbers;
|
||||||
|
private final RightContinuousStepFunction middleNumbers;
|
||||||
|
private final RightContinuousStepFunction largeNumbers;
|
||||||
|
|
||||||
|
private final double delta = 0.0000000001;
|
||||||
|
|
||||||
|
public RightContinuousStepFunctionOperatorTests(){
|
||||||
|
smallNumbers = RightContinuousStepFunction.constructFromPoints(Utils.easyList(
|
||||||
|
new Point(1.0, 1.0),
|
||||||
|
new Point(2.0, 3.0),
|
||||||
|
new Point(3.0, 2.0),
|
||||||
|
new Point(4.0, 1.0)
|
||||||
|
), 0.0);
|
||||||
|
|
||||||
|
middleNumbers = RightContinuousStepFunction.constructFromPoints(Utils.easyList(
|
||||||
|
new Point(3.5, 4.0),
|
||||||
|
new Point(4.0, 3.0),
|
||||||
|
new Point(5.0, 2.0),
|
||||||
|
new Point(6.0, 1.0)
|
||||||
|
), 5.0);
|
||||||
|
|
||||||
|
largeNumbers = RightContinuousStepFunction.constructFromPoints(Utils.easyList(
|
||||||
|
new Point(5.0, 5.0),
|
||||||
|
new Point(6.0, 6.0),
|
||||||
|
new Point(7.0, 3.0),
|
||||||
|
new Point(8.0, 2.0)
|
||||||
|
), 3.0);
|
||||||
|
|
||||||
|
}
|
||||||
|
|
||||||
|
@Test
|
||||||
|
public void testDifferenceNoOverlapLargeMinusSmall(){
|
||||||
|
DoubleBinaryOperator operator = (a, b) -> a - b;
|
||||||
|
|
||||||
|
final RightContinuousStepFunction largeSmallDifference = RightContinuousStepFunction.biOperation(
|
||||||
|
largeNumbers,
|
||||||
|
smallNumbers,
|
||||||
|
operator);
|
||||||
|
|
||||||
|
assertEquals(8, largeSmallDifference.getX().length);
|
||||||
|
assertEquals(8, largeSmallDifference.getY().length);
|
||||||
|
|
||||||
|
final double[] offsetTimes = {-0.1, 0.0, 0.1};
|
||||||
|
|
||||||
|
for(int time = 1; time <= 9; time++){
|
||||||
|
for(double offsetTime : offsetTimes){
|
||||||
|
final double timeToEvaluateAt = (double) time + offsetTime;
|
||||||
|
|
||||||
|
final double largeFunEvaluation = largeNumbers.evaluate(timeToEvaluateAt);
|
||||||
|
final double smallFunEvaluation = smallNumbers.evaluate(timeToEvaluateAt);
|
||||||
|
final double expectedDifference = operator.applyAsDouble(largeFunEvaluation, smallFunEvaluation);
|
||||||
|
|
||||||
|
final double actualEvaluation = largeSmallDifference.evaluate(timeToEvaluateAt);
|
||||||
|
|
||||||
|
assertEquals(expectedDifference, actualEvaluation, delta);
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
@Test
|
||||||
|
public void testDifferenceNoOverlapSmallMinusLarge(){
|
||||||
|
DoubleBinaryOperator operator = (a, b) -> a - b;
|
||||||
|
|
||||||
|
final RightContinuousStepFunction smallLargeDifference = RightContinuousStepFunction.biOperation(
|
||||||
|
smallNumbers,
|
||||||
|
largeNumbers,
|
||||||
|
operator);
|
||||||
|
|
||||||
|
assertEquals(8, smallLargeDifference.getX().length);
|
||||||
|
assertEquals(8, smallLargeDifference.getY().length);
|
||||||
|
|
||||||
|
final double[] offsetTimes = {-0.1, 0.0, 0.1};
|
||||||
|
|
||||||
|
for(int time = 1; time <= 9; time++){
|
||||||
|
for(double offsetTime : offsetTimes){
|
||||||
|
final double timeToEvaluateAt = (double) time + offsetTime;
|
||||||
|
|
||||||
|
final double smallFunEvaluation = smallNumbers.evaluate(timeToEvaluateAt);
|
||||||
|
final double largeFunEvaluation = largeNumbers.evaluate(timeToEvaluateAt);
|
||||||
|
final double expectedDifference = operator.applyAsDouble(smallFunEvaluation, largeFunEvaluation);
|
||||||
|
|
||||||
|
final double actualEvaluation = smallLargeDifference.evaluate(timeToEvaluateAt);
|
||||||
|
|
||||||
|
assertEquals(expectedDifference, actualEvaluation, delta);
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
@Test
|
||||||
|
public void testDifferenceSomeOverlapLargeMinusMiddle(){
|
||||||
|
DoubleBinaryOperator operator = (a, b) -> a - b;
|
||||||
|
|
||||||
|
final RightContinuousStepFunction combinedFunction = RightContinuousStepFunction.biOperation(
|
||||||
|
largeNumbers,
|
||||||
|
middleNumbers,
|
||||||
|
operator);
|
||||||
|
|
||||||
|
assertEquals(6, combinedFunction.getX().length);
|
||||||
|
assertEquals(6, combinedFunction.getY().length);
|
||||||
|
|
||||||
|
final double[] offsetTimes = {-0.1, 0.0, 0.1};
|
||||||
|
|
||||||
|
for(int time = 1; time <= 9; time++){
|
||||||
|
for(double offsetTime : offsetTimes){
|
||||||
|
final double timeToEvaluateAt = (double) time + offsetTime;
|
||||||
|
|
||||||
|
final double middleFunEvaluation = middleNumbers.evaluate(timeToEvaluateAt);
|
||||||
|
final double largeFunEvaluation = largeNumbers.evaluate(timeToEvaluateAt);
|
||||||
|
final double expectedDifference = operator.applyAsDouble(largeFunEvaluation, middleFunEvaluation);
|
||||||
|
|
||||||
|
final double actualEvaluation = combinedFunction.evaluate(timeToEvaluateAt);
|
||||||
|
|
||||||
|
assertEquals(expectedDifference, actualEvaluation, delta);
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
@Test
|
||||||
|
public void testDifferenceCompleteOverlap(){
|
||||||
|
DoubleBinaryOperator operator = (a, b) -> a - b;
|
||||||
|
|
||||||
|
final RightContinuousStepFunction combinedFunction = RightContinuousStepFunction.biOperation(
|
||||||
|
middleNumbers,
|
||||||
|
middleNumbers,
|
||||||
|
operator);
|
||||||
|
|
||||||
|
assertEquals(4, combinedFunction.getX().length);
|
||||||
|
assertEquals(4, combinedFunction.getY().length);
|
||||||
|
|
||||||
|
final double[] offsetTimes = {-0.1, 0.0, 0.1};
|
||||||
|
|
||||||
|
for(int time = 1; time <= 9; time++){
|
||||||
|
for(double offsetTime : offsetTimes){
|
||||||
|
final double timeToEvaluateAt = (double) time + offsetTime;
|
||||||
|
|
||||||
|
final double actualEvaluation = combinedFunction.evaluate(timeToEvaluateAt);
|
||||||
|
|
||||||
|
assertEquals(0.0, actualEvaluation, delta);
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
@Test
|
||||||
|
public void testPowerFunction(){
|
||||||
|
final DoubleUnaryOperator operator = d -> d*d;
|
||||||
|
|
||||||
|
final RightContinuousStepFunction squaredFunction = smallNumbers.unaryOperation(operator);
|
||||||
|
|
||||||
|
assertEquals(4, squaredFunction.getX().length);
|
||||||
|
assertEquals(4, squaredFunction.getY().length);
|
||||||
|
|
||||||
|
final double[] offsetTimes = {-0.1, 0.0, 0.1};
|
||||||
|
|
||||||
|
for(int time = 1; time <= 9; time++){
|
||||||
|
for(double offsetTime : offsetTimes){
|
||||||
|
final double timeToEvaluateAt = (double) time + offsetTime;
|
||||||
|
|
||||||
|
final double expectedEvaluation = operator.applyAsDouble(smallNumbers.evaluate(timeToEvaluateAt));
|
||||||
|
final double actualEvaluation = squaredFunction.evaluate(timeToEvaluateAt);
|
||||||
|
|
||||||
|
assertEquals(expectedEvaluation, actualEvaluation, delta);
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
}
|
||||||
Loading…
Add table
Reference in a new issue