2fb80df5a5
Add test for CompetingRiskFunctions
2018-08-31 22:32:54 -07:00
8333579a1f
Code cleanup; fixed 3 minor bugs in the settings
2018-08-31 13:10:30 -07:00
75f34853ab
Migrate to Java 1.8
2018-08-31 12:48:39 -07:00
c85cebb59f
Broke two methods in CompetingRiskErrorRateCalculator into static
...
methods in a new class.
2018-08-27 11:18:56 -07:00
6d65d48844
Increased test ntree; making test more stable.
2018-08-09 16:33:57 -07:00
55eab76610
Simplied code.
2018-08-08 15:57:28 -07:00
d85f4eb099
Refactored competing risk combiners and differentiators into their own
...
packages.
2018-08-07 10:59:19 -07:00
bf56dfb59d
Add ability to compute different error rates.
2018-08-07 10:52:52 -07:00
d3994212b6
Fix a bug in naive mortality error measure; implement IPCW concordance
...
measure if you can provide the censoring distribution.
2018-07-26 12:45:12 -07:00
e1caef6d56
Implement naive mortality error measure
2018-07-25 15:29:09 -07:00
650579a430
Implement naive version of concordance index.
...
Note that results DO NOT MATCH with randomForestSRC; so take these
results with a grain of salt.
2018-07-25 14:18:50 -07:00
7a77851f94
WIP - Add a CompetingRiskErrorRateCalculator.
...
Note that tests fail.
2018-07-24 14:35:27 -07:00
dc9d20aa1a
Add ability to load gziped CSV files
2018-07-18 10:05:49 -07:00
05f9122b58
Add capability to load trees back into memory.
2018-07-17 13:54:59 -07:00
fffdfe85bf
Finish competing risk implementation. Fix a bug in tree training
...
algorithm.
2018-07-16 16:58:11 -07:00
462b0d9c35
Implement Response & GroupDifferentiators for CompetingRisk problems.
...
Also adjusted how settings are done to allow for specifying
differentiators & responses that may require arguments.
Note that CompetingRisk code is untested at this point.
2018-07-10 14:43:51 -07:00
4bbb0e0948
Fix a bug whereby FactorCovariate fails when "NA" is provided.
...
Also improved testing around this.
2018-07-06 13:33:58 -07:00
6b62ad95c3
Add support for loading datasets by CSV files.
2018-07-06 13:21:56 -07:00
fe9ff37dcf
Upgraded Settings class to allow for covariates to be built from
...
provided values.
2018-07-05 19:04:26 -07:00
b010e79269
Add basic Settings class with persistence.
2018-07-05 13:59:52 -07:00
2cdcbe6cbf
Refactor different classes into subpackages.
2018-07-05 12:59:29 -07:00
3b8952e13c
Added some tests for FactorCovariate. Moved workshop over to test
...
codebase.
2018-07-04 13:24:34 -07:00
