ae91dbe9e7
Explicitly store RightContinuousStepFunction in CompetingRiskFunctions
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Done so that RUtils is useful. Also optimized imports.
2018-10-25 10:49:43 -07:00
c68f67e47a
Massive optimizations;
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Refactored how MathFunctions are structured to use more primitives and
less objects.
Optimized competing risk group differentiators to run faster.
Removed alternative competing risk response combiners (may be added back
later)
2018-10-25 10:34:27 -07:00
7fba964af9
Optimize CompetingRiskResponseCombiner
2018-10-12 12:11:48 -07:00
aa733d5eba
Switch code to storing Covariate.Value using arrays instead of Maps
2018-09-18 11:17:15 -07:00
7008959999
Add functionality to analyze using validation sets
2018-09-13 12:09:20 -07:00
e0681763ef
Add convenience methods to improve R interface performance
2018-09-10 12:31:35 -07:00
b8024275a9
Fix a bug where CompetingRiskFunctions returns NaNs when using set times
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in response combiner
2018-09-01 09:43:42 -07:00
2fb80df5a5
Add test for CompetingRiskFunctions
2018-08-31 22:32:54 -07:00
8333579a1f
Code cleanup; fixed 3 minor bugs in the settings
2018-08-31 13:10:30 -07:00
75f34853ab
Migrate to Java 1.8
2018-08-31 12:48:39 -07:00
c85cebb59f
Broke two methods in CompetingRiskErrorRateCalculator into static
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methods in a new class.
2018-08-27 11:18:56 -07:00
6d65d48844
Increased test ntree; making test more stable.
2018-08-09 16:33:57 -07:00
55eab76610
Simplied code.
2018-08-08 15:57:28 -07:00
d85f4eb099
Refactored competing risk combiners and differentiators into their own
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packages.
2018-08-07 10:59:19 -07:00
bf56dfb59d
Add ability to compute different error rates.
2018-08-07 10:52:52 -07:00
d3994212b6
Fix a bug in naive mortality error measure; implement IPCW concordance
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measure if you can provide the censoring distribution.
2018-07-26 12:45:12 -07:00
e1caef6d56
Implement naive mortality error measure
2018-07-25 15:29:09 -07:00
650579a430
Implement naive version of concordance index.
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Note that results DO NOT MATCH with randomForestSRC; so take these
results with a grain of salt.
2018-07-25 14:18:50 -07:00
7a77851f94
WIP - Add a CompetingRiskErrorRateCalculator.
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Note that tests fail.
2018-07-24 14:35:27 -07:00
dc9d20aa1a
Add ability to load gziped CSV files
2018-07-18 10:05:49 -07:00
05f9122b58
Add capability to load trees back into memory.
2018-07-17 13:54:59 -07:00
fffdfe85bf
Finish competing risk implementation. Fix a bug in tree training
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algorithm.
2018-07-16 16:58:11 -07:00
462b0d9c35
Implement Response & GroupDifferentiators for CompetingRisk problems.
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Also adjusted how settings are done to allow for specifying
differentiators & responses that may require arguments.
Note that CompetingRisk code is untested at this point.
2018-07-10 14:43:51 -07:00
4bbb0e0948
Fix a bug whereby FactorCovariate fails when "NA" is provided.
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Also improved testing around this.
2018-07-06 13:33:58 -07:00
6b62ad95c3
Add support for loading datasets by CSV files.
2018-07-06 13:21:56 -07:00
fe9ff37dcf
Upgraded Settings class to allow for covariates to be built from
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provided values.
2018-07-05 19:04:26 -07:00
b010e79269
Add basic Settings class with persistence.
2018-07-05 13:59:52 -07:00
2cdcbe6cbf
Refactor different classes into subpackages.
2018-07-05 12:59:29 -07:00
3b8952e13c
Added some tests for FactorCovariate. Moved workshop over to test
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codebase.
2018-07-04 13:24:34 -07:00
