package ca.joeltherrien.randomforest; import ca.joeltherrien.randomforest.utils.StepFunction; import ca.joeltherrien.randomforest.utils.Utils; import org.junit.jupiter.api.Test; import java.util.ArrayList; import java.util.HashSet; import java.util.List; import java.util.function.DoubleSupplier; import java.util.stream.DoubleStream; import static org.junit.jupiter.api.Assertions.assertEquals; import static org.junit.jupiter.api.Assertions.assertTrue; public class TestUtils { public static void closeEnough(double expected, double actual, double margin){ assertTrue(Math.abs(expected - actual) < margin, "Expected " + expected + " but saw " + actual); } /** * We know the function is cumulative; make sure it is ordered correctly and that that function is monotone. * * @param function */ public static void assertCumulativeFunction(StepFunction function){ Double previousTime = null; Double previousY = null; final double[] times = function.getX(); for(int i=0; i<times.length; i++){ final double time = times[i]; final double y = function.evaluateByIndex(i); if(previousTime != null){ assertTrue(previousTime < time, "Points should be ordered and strictly different"); assertTrue(previousY <= y, "Cumulative incidence functions are monotone"); } previousTime = time; previousY = y; } } public static void assertSurvivalCurve(StepFunction function){ Double previousTime = null; Double previousY = null; final double[] times = function.getX(); for(int i=0; i<times.length; i++){ final double time = times[i]; final double y = function.evaluateByIndex(i); if(previousTime != null){ assertTrue(previousTime < time, "Points should be ordered and strictly different"); assertTrue(previousY >= y, "Survival functions are monotone"); } previousTime = time; previousY = y; } } @Test public void testOneMinusECDF(){ final double[] times = new double[]{1.0, 1.0, 2.0, 3.0, 3.0, 50.0}; final StepFunction survivalCurve = Utils.estimateOneMinusECDF(times); final double margin = 0.000001; closeEnough(1.0, survivalCurve.evaluate(0.0), margin); closeEnough(1.0, survivalCurve.evaluatePrevious(1.0), margin); closeEnough(4.0/6.0, survivalCurve.evaluate(1.0), margin); closeEnough(4.0/6.0, survivalCurve.evaluatePrevious(2.0), margin); closeEnough(3.0/6.0, survivalCurve.evaluate(2.0), margin); closeEnough(3.0/6.0, survivalCurve.evaluatePrevious(3.0), margin); closeEnough(1.0/6.0, survivalCurve.evaluate(3.0), margin); closeEnough(1.0/6.0, survivalCurve.evaluatePrevious(50.0), margin); closeEnough(0.0, survivalCurve.evaluate(50.0), margin); assertSurvivalCurve(survivalCurve); } @Test public void reduceListToSize(){ final List<Integer> testList = Utils.easyList(1, 2, 3, 4, 5, 6, 7, 8, 9, 10); for(int i=0; i<100; i++) { // want to test many times to ensure it doesn't work just due to randomness final List<Integer> testList1 = new ArrayList<>(testList); // Test when removing elements Utils.reduceListToSize(testList1, 7); assertEquals(7, testList1.size()); // verify proper size assertEquals(7, new HashSet<>(testList1).size()); // verify the items are unique final List<Integer> testList2 = new ArrayList<>(testList); // Test when adding elements Utils.reduceListToSize(testList2, 3); assertEquals(3, testList2.size()); // verify proper size assertEquals(3, new HashSet<>(testList2).size()); // verify the items are unique final List<Integer> testList3 = new ArrayList<>(testList); // verify no change Utils.reduceListToSize(testList3, 15); assertEquals(10, testList3.size()); // verify proper size assertEquals(10, new HashSet<>(testList3).size()); // verify the items are unique } } @Test public void testBinarySearchLessThan(){ /* There was a bug where I didn't add startIndex to range/2 for middle; no other tests caught it! */ final int n = 10000; double[] x = DoubleStream.generate(new DoubleSequenceGenerator()).limit(n).toArray(); for(int i = 0; i < n; i=i+100){ final int index = Utils.binarySearchLessThan(0, n, x, i); final int indexOff = Utils.binarySearchLessThan(0, n, x, ((double) i) + 1.5); assertEquals(i, index); assertEquals(i+1, indexOff); } final int indexTooFar = Utils.binarySearchLessThan(0, n, x, n + 100); assertEquals(n-1, indexTooFar); final int indexTooEarly = Utils.binarySearchLessThan(0, n, x, -100); assertEquals(-1, indexTooEarly); } private static class DoubleSequenceGenerator implements DoubleSupplier { private double previous = 0.0; @Override public double getAsDouble() { return previous++; } } }