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Improve documentation with more references

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Joel Therrien 2019-07-22 11:41:25 -07:00
parent c36a3d8d37
commit cb4c9b73ae
4 changed files with 32 additions and 13 deletions
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5
R/cr_naiveConcordance.R
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@ -16,6 +16,11 @@
#' list should correspond to one of the events in the order of event 1 to J, #' list should correspond to one of the events in the order of event 1 to J,
#' and should be a vector of the same length as responses. #' and should be a vector of the same length as responses.
#' @export #' @export
#' @references Section 3.2 of Wolbers, Marcel, Paul Blanche, Michael T. Koller,
#' Jacqueline C M Witteman, and Thomas A Gerds. 2014. “Concordance for
#' Prognostic Models with Competing Risks.” Biostatistics 15 (3): 526–39.
#' https://doi.org/10.1093/biostatistics/kxt059.
#'
#' @examples #' @examples
#' data <- data.frame(delta=c(1,1,0,0,2,2), T=1:6, x=1:6) #' data <- data.frame(delta=c(1,1,0,0,2,2), T=1:6, x=1:6)
#' #'

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R/wihs.R
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@ -15,9 +15,13 @@
#' @source The data was obtained from the randomForestSRC R package. #' @source The data was obtained from the randomForestSRC R package.
#' #'
#' @references Bacon MC, von Wyl V, Alden C, Sharp G, Robison E, Hessol N, Gange #' @references Bacon MC, von Wyl V, Alden C, Sharp G, Robison E, Hessol N, Gange
#' S, Barranday Y, Holman S, Weber K, Young MA (2005). “The Women’s #' S, Barranday Y, Holman S, Weber K, Young MA (2005). “The Women’s Interagency
#' Interagency HIV Study: an Observational Cohort Brings Clinical Sciences to #' HIV Study: an Observational Cohort Brings Clinical Sciences to the Bench.”
#' the Bench.” Clinical and Vaccine Immunology, 12(9), 1013–1019. #' Clinical and Vaccine Immunology, 12(9), 1013–1019.
#' doi:10.1128/CDLI.12.9.1013-1019.2005. #' doi:10.1128/CDLI.12.9.1013-1019.2005.
#'
#' Ishwaran, H., and Udaya B. Kogalur. 2018. Random Forests for Survival,
#' Regression, and Classification (Rf-Src). manual.
#' https://cran.r-project.org/package=randomForestSRC.
#' #'
"wihs" "wihs"

6
man/naiveConcordance.Rd
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@ -41,3 +41,9 @@ mortalities <- list(
naiveConcordance(CR_Response(newData$delta, newData$T), mortalities) naiveConcordance(CR_Response(newData$delta, newData$T), mortalities)
} }
\references{
Section 3.2 of Wolbers, Marcel, Paul Blanche, Michael T. Koller,
Jacqueline C M Witteman, and Thomas A Gerds. 2014. “Concordance for
Prognostic Models with Competing Risks.” Biostatistics 15 (3): 526–39.
https://doi.org/10.1093/biostatistics/kxt059.
}

12
man/wihs.Rd
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@ -25,9 +25,13 @@ time may also be censored.
} }
\references{ \references{
Bacon MC, von Wyl V, Alden C, Sharp G, Robison E, Hessol N, Gange Bacon MC, von Wyl V, Alden C, Sharp G, Robison E, Hessol N, Gange
S, Barranday Y, Holman S, Weber K, Young MA (2005). “The Women’s S, Barranday Y, Holman S, Weber K, Young MA (2005). “The Women’s Interagency
Interagency HIV Study: an Observational Cohort Brings Clinical Sciences to HIV Study: an Observational Cohort Brings Clinical Sciences to the Bench.”
the Bench.” Clinical and Vaccine Immunology, 12(9), 1013–1019. Clinical and Vaccine Immunology, 12(9), 1013–1019.
doi:10.1128/CDLI.12.9.1013-1019.2005. doi:10.1128/CDLI.12.9.1013-1019.2005.
Ishwaran, H., and Udaya B. Kogalur. 2018. Random Forests for Survival,
Regression, and Classification (Rf-Src). manual.
https://cran.r-project.org/package=randomForestSRC.
} }
\keyword{datasets} \keyword{datasets}