From ec4ef7ea441c385f6ff29b01ba4c2c0a03f2ca4a Mon Sep 17 00:00:00 2001 From: Joel Therrien Date: Wed, 3 Jul 2019 09:35:45 -0700 Subject: [PATCH] Update steps for obtaining Java code --- ...jar => largeRCRF-library-1.0-SNAPSHOT.jar} | Bin 115817 -> 115905 bytes java/OBTAINING.md | 10 +++++----- 2 files changed, 5 insertions(+), 5 deletions(-) rename inst/java/{largeRCRF-1.0-SNAPSHOT.jar => largeRCRF-library-1.0-SNAPSHOT.jar} (66%) diff --git a/inst/java/largeRCRF-1.0-SNAPSHOT.jar b/inst/java/largeRCRF-library-1.0-SNAPSHOT.jar similarity index 66% rename from inst/java/largeRCRF-1.0-SNAPSHOT.jar rename to inst/java/largeRCRF-library-1.0-SNAPSHOT.jar index 1f16ff3f46f68142e04af8ec7a231c77e9a4993d..28cdf7c109fc0782ae9f7be304332570094042c0 100644 GIT binary patch delta 5455 zcmZ`-3p|xs_kOqQA(Tr8&4i>rDnj+wq~wPayGD^xQFB7C z9HWqol*!j+Y6^+&(p584YD)jT_BrG=zc0VM=RE6K&t7ZowfDQXr#s{uGvt;0eWYbH z7#@$uOcUlP&5$w`=FB-JMLxf=A-@GvkSjcvBOiD;sszBJqs$6tA4Vo@XV7X{0jJt+EoNdCTG73Xwj$LQ_QsK))qo@I(<(WjE?&ApqAtq#)~RP!HeP0Por{fb;FY zV$Z20OT%Z08hb)#JN+*4!Lf&snqZID8SvX@W<>p!0}`d+d%bxKM8fjzLzO_It4BOe zoqHD5XlM}!v#<~uvH5D7D7Z-I4_pZJ;6pjldsTE6aJKsLVw&FChsrc)zC93R1wBGJ zHtVJz1kCnU)c{xItc11$S+LKHl0+M1k)|Y7d;GZ^$+EuJ|Dv%jt^AR?h{mH^bbMhc zbzysio9Xwp5ADeq%6Lr`l4G4;lxu?S%dnxrRWSb)k{9f{(EE3y~2sZ#Z&mBV1q zkgkNJz?NjyC;})U>Eq31NQwP%(~po64S`Unv35J&fEHexE*`-MmzE-BcFkrPT8`b3 z88mfJft*>F4dOQLDEpe_M}&is4c~W%HbB}VE9`#~jT0mlK}}d;sX5qbY6RC}yNhT+ z$ugQH=q^%VWey*sZPrniLTB)0m^3_b_5`$mJYlWi3QMGozqdr7SnYz8AzD$~2Bbhg z9N2=cQkuy5l9*OACnJZxab_x6nztmra~!1Ny*57&U{@M+DpC0dZ0C6N%KG= zXlha2LNrJzPJSqcj!+ta)S(n2QlY_d@FCO|DZxBqGh^f=IyeK-Du}jNqCY@XFlb1l zR>TH6Xev06+3N-e(c)>Sfr@IFB5x>-h)B?h#%uGD3juINKJrtYCcHnF8S&2sH{_$q z*cu}R9zQxNGCm@HBaZMulT;^-Vmf|drVcT!;?~4iZitC)3l5mqX+19GRr%}Vbr)iP z%N}Rzp{~T21?Gnw>nINR3kGc=Tp^ zlm)I&P2A<$nA2v<+`N*$zx=E2?ZRO5ny=R)!L?PHDP4D+JCvL$~@L>%e@~zqbaoJ?mLKd0?i-maV2HsY<5HR1TT$e-_iPveztB)1gq!5nI^V9o1MV zb-1;1Tf)ujCmTJsU8u}+-1Kqq{b2vIF7;V?H}Tfvi#(Tqt9kixWNrS+x%o0La}Pw^ zsCb@M|8D+c*(-aut_UjXSM54^*Prj>9lCN=oN_{CMBu%uhoNd8m!9`(i9N_~+q^fy ztT|ONs?#9Q)F)`qQL8YklYOzmqT*%+^S!g5PrMcV=8uo3>>O4!{nu8hWrb}~t9Q%# zDidSo%!LOxcVu31_`Uo3jbi)L7LiEmw6redV8D9+*xb9kF9t!eWzWmxiIC&>*LGIaZ2 ziz_aEP2BSM^-;^$DgSm&ajUfkbM@WkX4#^=7@3@&nHr%UQ)=~V`r1ss-_>a{@a}!G zW2j%Dw$bjZ<*(1BpS|cixn`<-;I`mLbMt-}+t!|z-)CT=@-%7U3AD>8dzXG>b*E?6 z+ubwoTr`|_qp-v0W%QMcC#*ttq&f_IJKpwHVaw4o^_c_GkVf~?vk4o?zL8A+`}-g% z4QA+ogHsET6FK7G+5+Sb`^?7zWCc(De&h_#)%($$;eAI+viBI_=KaW$9&C;uKuQL% zFIkK9?*_;+jQSXcnK@#QVwm>`uRV<5oP_xY$$ouCUJ&6u1;-sk69L;%NU-2>6eGtZ zbHG*=5v*2&V&s%G39wecvNZt{xEiQo{ey^Z=vjvdo~})B8{BnBjMW?Liv zYgjQp0Au|%mFmtY5|3pL{*~qwBL^ux7;87gdD?yR|1yYv7-&$`!le&0LWEe{h>%1e?D=kJ^Fh*lB8Do++V1hdL z33w98hbkBbZ~XN;(ug-mg=cXT?$4$Qj>KvzZ#F^aDBBz{F!OmdUrza zBy?{MeQcsc+z30Bi{mt?B5|JIB*E#qR}JdW1@YJBNN{@WRR=t)g5Z~P32rU;+@d`^ zBZa33-h_dVdrlz};I4*QT3A3aIECX=EK;Kx^|mBrXp=flA^pS6Xi+hx^QsV>yfL2+ zcZgtCcvA(Up?wQe^t5tFRsrXomdM(d8OyyT89yS@cAU)fL_>60+**aSL0b`)?(-Vb z)cS(4JT)9Tw86M7X7+TD_Rko{FeV%suLfY_Klh{YG>@IRd5WbZhxep;tvJm1W~!SQ zsy19|!xA!H;zg{cpn>dhxelz%-KGAQ7#6XMn}EF%Wy6&PIMI-*VE zkyrk`;x?(_Sh9I=x4Z}aK%GxniM26#eWWYWR2jyP6N1${V0ps5Wdanb{0JFk&nH?W z0Y5?!qod+Y*RPZq^goLYE*lJnTf-GRo-(+&3hC2Z4sn}^Gst}j^!g#4ZBk#X*y(39 zkp=~E47CrR6I29G%!ljH=$-hWkO zyfVkCfHQ@XC8+I~K6Naa+g$Rhn#l?1v)ZtaEeN&4a!Az_gK)DWIV)hZBjTC5T#bVM zbsG2zTZ@n*CKnzR-2RJX1!#NNcIA)}-AHTub4GO6!8x_a3*SD2bZE6c4ThoJgxV@M znmSJp-#drGDa-araQXtm(o-P9wWwI1xbw)d#z}dAVU+QBVEAfHRJsQdA z-?)g=yONC5M$hp6dP0cugmC?^PB=2A8}+|h#)A{1^envPEShP-eQ)2Ni=U{uS&*!b z=`qYwj>mfH5kqy`)8+Xa$@(ZG2b53_iyugJ@wgCjk%spvr11JInuJ2Yuoy?xA$`Dh z))8!pnEb2`iMOpyogOFC$xfV0wqowOtBe#EpyWK#q9H`v^WD-(8|Z2?%wkRmmFs{S z1%rI7C8cRd7Q2R@L7LQc#=1Ele95GHlGX_4xQ3)aYxv?WOQeBk|16H)P((zmw}Qwt zxMhzSJpo&QkUN5ai>9H8_@zkP-k)oTd0plge=tuOK0PLb**=GB*2R4_NS#JI;SU8A zN1}Bm$@+4lP0AhN6l;uhhEF7Q=g|zv|HFCY^RJa9q9Fu_X9Uh;J^JeLWj@M`Et4O_mL&@!!VKL=YuK3R2Go; 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You can include it with your modifications into the R package by following these steps: - -* Delete all the contents of `inst/java/` -* Build the Java code in its own separate directory using `mvn clean package` (make sure you have Maven installed) -* Copy the `target/largeRCRF-1.0-SNAPSHOT.jar` file produced in the Java directory into `inst/java/` \ No newline at end of file +The Java source code for this package can be obtained at https://github.com/jatherrien/largeRCRF-Java, and is also licensed under the GPL-3 license. You can include it with your modifications into the R package by following these steps: + +* Delete the Jar file in `inst/java/` +* Build the Java code in its own separate directory using `mvn clean package` in the root of the directory (same folder containing `README.md`). Make sure you have [Maven](https://maven.apache.org/) installed. +* Copy the `library/target/largeRCRF-library/1.0-SNAPSHOT.jar` file produced in the Java directory into `inst/java/` \ No newline at end of file